Author | Dávila, Alberto M. R. | |
Author | Mendes, Pablo N. | |
Author | Wagner, Glauber | |
Author | Tschoeke, Diogo A. | |
Author | Cuadrat, Rafael R. C. | |
Author | Liberman, Felipe | |
Author | Matos, Luciana | |
Author | Satake, Thiago | |
Author | Ocaña, Kary A. C. S. | |
Author | Triana, Omar | |
Author | Cruz, Sérgio M. S. | |
Author | Jucá, Henrique C. L. | |
Author | Cury, Juliano C. | |
Author | Silva, Fabricio N. | |
Author | Geronimo, Guilherme A. | |
Author | Ruiz, Margarita | |
Author | Ruback, Eduardo | |
Author | Silva, Floriano P. | |
Author | Probst, Christian M. | |
Author | Grisard, Edmundo C. | |
Author | Krieger, Marco A. | |
Author | Goldenberg, Samuel | |
Author | Cavalcanti, Maria C. R. | |
Author | Moraes, Milton O. | |
Author | Campos, Maria L. M. | |
Author | Mattoso, Marta | |
Access date | 2019-04-04T17:31:06Z | |
Available date | 2019-04-04T17:31:06Z | |
Document date | 2008 | |
Citation | DÁVILA, Alberto M. R. et al. ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Research, v. 36, p. D547–D552, 2008. | pt_BR |
ISSN | 0305-1048 | pt_BR |
URI | https://www.arca.fiocruz.br/handle/icict/32381 | |
Language | eng | pt_BR |
Publisher | Oxford University Press | pt_BR |
Rights | open access | pt_BR |
Subject in Portuguese | ProtozoaDB | pt_BR |
Subject in Portuguese | Capacidades de bioinformática | pt_BR |
Subject in Portuguese | Desenvolvimento de sistemas locais e regionais | pt_BR |
Subject in Portuguese | Base de dados | pt_BR |
Subject in Portuguese | Genômica dos protozoários | pt_BR |
Subject in Portuguese | Pesquisas | pt_BR |
Subject in Portuguese | Avanço científico | pt_BR |
Title | ProtozoaDB: dynamic visualization and exploration of protozoan genomes | pt_BR |
Type | Article | pt_BR |
DOI | 10.1093/nar/gkm820 | |
Abstract | ProtozoaDB (http://www.biowebdb.org/protozoadb) is being developed to initially host both genomics and post-genomics data from Plasmodium falciparum, Entamoeba histolytica, Trypanosoma brucei, T. cruzi and Leishmania major, but will hopefully host other protozoan species as more genomes are sequenced. It is based on the Genomics Unified Schema and offers a modern Web-based interface for user-friendly data visualization and exploration. This database is not intended to duplicate other similar efforts such as GeneDB, PlasmoDB, TcruziDB or even TDRtargets, but to be complementary by providing further analyses with emphasis on distant similarities (HMM-based) and phylogeny-based annotations including orthology analysis. ProtozoaDB will be progressively linked to the above-mentioned databases, focusing in performing a multi-source dynamic combination of information through advanced interoperable Web tools such as Web services. Also, to provide Web services will allow third-party software to retrieve and use data from ProtozoaDB in automated pipelines (workflows) or other interoperable Web technologies, promoting better information reuse and integration. We also expect ProtozoaDB to catalyze the development of local and regional bioinformatics capabilities (research and training), and therefore promote/enhance scientific advancement in developing countries. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Wright State University. Knoesis Center. USA. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil / Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil / Universidade do Oeste de Santa Catarina. SC, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil. | pt_BR |
Affilliation | Universidade Federal do Paraná. PR, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil / Antioquia University. Colombia. | pt_BR |
Affilliation | Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil / Universidade Federal do Rio de Janeiro. NCE. Rio de Janeiro, RJ, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil. | pt_BR |
Affilliation | Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil. | pt_BR |
Affilliation | Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil. | pt_BR |
Affilliation | Instituto Militar de Engenharia. Rio de Janeiro, RJ, Brasil. | pt_BR |
Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. | pt_BR |
Affilliation | Universidade Federal do Rio de Janeiro. DCC. Rio de Janeiro, RJ, Brasil. | pt_BR |
Affilliation | Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil. | pt_BR |
Subject | ProtozoaDB | pt_BR |
Subject | Protozoan genomes | pt_BR |
Subject | Scientific advancement | pt_BR |
Subject | Database | pt_BR |
Subject | Research | pt_BR |
Subject | Development of local and regional bioinformatics capabilities | pt_BR |
e-ISSN | 1362-4962 | |