| Author | Pylro, Victor Satler | |
| Author | Morais, Daniel Kumazawa | |
| Author | Oliveira, Francislon Silva de | |
| Author | Santos, Fausto Gonçalves dos | |
| Author | Lemos, Leandro Nascimento | |
| Author | Oliveira, Guilherme Correa | |
| Author | Roesch, Luiz Fernando Wurdig | |
| Access date | 2017-07-10T17:57:44Z | |
| Available date | 2017-07-10T17:57:44Z | |
| Document date | 2016 | |
| Citation | PYLRO, Victor Satler et al. BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies. Microb Ecol., v. 72, n. 2, p. 443-7, 2016 | pt_BR |
| ISSN | 0095-3628 | pt_BR |
| URI | https://www.arca.fiocruz.br/handle/icict/19985 | |
| Language | eng | pt_BR |
| Publisher | Springer-Verlag | pt_BR |
| Rights | restricted access | pt_BR |
| Subject in Portuguese | BMP | pt_BR |
| Subject in Portuguese | bioinformática | pt_BR |
| Subject in Portuguese | Linux | pt_BR |
| Title | BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies | pt_BR |
| Type | Article | |
| DOI | 10.1007/s00248-016-0785-x | |
| Abstract | Recent advances in science and technology are leading to a revision and re-orientation of methodologies, addressing old and current issues under a new perspective. Advances in next generation sequencing (NGS) are allowing comparative analysis of the abundance and diversity of whole microbial communities, generating a large amount of data and findings at a systems level. The current limitation for biologists has been the increasing demand for computational power and training required for processing of NGS data. Here, we describe the deployment of the Brazilian Microbiome Project Operating System (BMPOS), a flexible and user-friendly Linux distribution dedicated to microbiome studies. The Brazilian Microbiome Project (BMP) has developed data analyses pipelines for metagenomic studies (phylogenetic marker genes), conducted using the two main high-throughput sequencing platforms (Ion Torrent and Illumina MiSeq). The BMPOS is freely available and possesses the entire requirement of bioinformatics packages and databases to perform all the pipelines suggested by the BMP team. The BMPOS may be used as a bootable live USB stick or installed in any computer with at least 1 GHz CPU and 512 MB RAM, independent of the operating system previously installed. The BMPOS has proved to be effective for sequences processing, sequences clustering, alignment, taxonomic annotation, statistical analysis, and plotting of metagenomic data. The BMPOS has been used during several metagenomic analyses courses, being valuable as a tool for training, and an excellent starting point to anyone interested in performing metagenomic studies. The BMPOS and its documentation are available at http://www.brmicrobiome.org. | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Centro de Pesquisa René Rachou. Biologia de Grupos e Genomica Computacional. Belo Horizonte, MG, Brazil | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Centro de Pesquisa René Rachou. Biologia de Grupos e Genomica Computacional. Belo Horizonte, MG, Brazil | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Centro de Pesquisa René Rachou. Biologia de Grupos e Genomica Computacional. Belo Horizonte, MG, Brazil | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Centro de Pesquisa René Rachou. Biologia de Grupos e Genomica Computacional. Belo Horizonte, MG, Brazil | pt_BR |
| Affilliation | Universidade de São Paulo. Instituto de Química. Programa de Pós-graduação Interunidades em Bioinformática. São Paulo, SP, Brazil. | pt_BR |
| Affilliation | Instituto Vale de Tecnologia. Belém, PA, Brazil. | pt_BR |
| Affilliation | Universidade Federal do Pampa. São Gabriel, RS, Brazil. | pt_BR |
| Subject | BMP | pt_BR |
| Subject | Bioinformatics | pt_BR |
| Subject | Linux | pt_BR |
| Subject | Microbiome | pt_BR |
| Subject | Operating system | pt_BR |
| Embargo date | 2022-01-01 | |
