| Author | Thompson, Cristiane C. | |
| Author | Vicente, Ana Carolina P. | |
| Author | Souza, Rangel C. | |
| Author | Vasconcelos, Ana Tereza R. | |
| Author | Vesth, Tammi | |
| Author | Alves, Nelson | |
| Author | Ussery, David W. | |
| Author | Iida, Tetsuya | |
| Author | Thompson, Fabiano L. | |
| Access date | 2019-01-08T14:51:38Z | |
| Available date | 2019-01-08T14:51:38Z | |
| Document date | 2009 | |
| Citation | THOMPSON, Cristiane C. Genomic taxonomy of virbios. BMC Evolutionary Biology, v.9, n.258, 16p, Oct. 2009. | pt_BR |
| ISSN | 1471-2148 | pt_BR |
| URI | https://www.arca.fiocruz.br/handle/icict/30923 | |
| Language | eng | pt_BR |
| Publisher | BioMed Central | pt_BR |
| Rights | open access | |
| Subject in Portuguese | Taxonomia genômica | pt_BR |
| Subject in Portuguese | Vibrios | pt_BR |
| Subject in Portuguese | Análise de Sequência Multilocus | pt_BR |
| Subject in Portuguese | Identidade Média de Aminoácidos | pt_BR |
| Title | Genomic taxonomy of Vibrios | pt_BR |
| Type | Article | |
| DOI | 10.1186/1471-2148-9-258 | |
| Abstract | Vibrio taxonomy has been based on a polyphasic approach. In this study, we retrieve useful taxonomic information (i.e. data that can be used to distinguish different taxonomic levels, such as species and genera) from 32 genome sequences of different vibrio species. We use a variety of tools to explore the taxonomic relationship between the sequenced genomes, including Multilocus Sequence Analysis (MLSA), supertrees, Average Amino Acid Identity (AAI), genomic signatures, and Genome BLAST atlases. Our aim is to analyse the usefulness of these tools for species identification in vibrios. | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil. | pt_BR |
| Affilliation | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Genética Molecular de Microrganismos. Rio de Janeiro, RJ. Brasil. | pt_BR |
| Affilliation | Laboratório Nacional de Computação Científica. Departamento de Matemática Aplicada e Computacional. Laboratório de Bioinformática. Petrópolis, RJ, Brasil. | pt_BR |
| Affilliation | Laboratório Nacional de Computação Científica. Departamento de Matemática Aplicada e Computacional. Laboratório de Bioinformática. Petrópolis, RJ, Brasil. | pt_BR |
| Affilliation | The Technical University of Denmark. Center for Biological Sequence Analysis. Department of Biotechnology. Lyngby, Denmark. | pt_BR |
| Affilliation | Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil. | pt_BR |
| Affilliation | The Technical University of Denmark. Center for Biological Sequence Analysis. Department of Biotechnology. Lyngby, Denmark. | pt_BR |
| Affilliation | Osaka University. Research Institute for Microbial Diseases. International Research Center for Infectious Diseases. Laboratory of Genomic Research on Pathogenic Bacteria. Osaka, Japan. | pt_BR |
| Affilliation | Universidade Federal do Rio de Janeiro. Instituto de Biologia. Departamento de Genética. Rio de Janeiro, RJ, Brasil. | pt_BR |
| Subject | Genomic taxonomy | pt_BR |
| Subject | vibrios | pt_BR |
| Subject | Multilocus Sequence Analysis | pt_BR |
| Subject | Average Amino Acid Identity | pt_BR |
| Subject | Genome BLAST atlases | pt_BR |
