Please use this identifier to cite or link to this item:
GLOBAL DISPARITIES IN SARS-COV-2 GENOMIC SURVEILLANCE
https://www.arca.fiocruz.br/handle/icict/51701
Communicable Diseases Genomics Network (Australia and New Zealand): Amy Jennison (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Lex Leong (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); David Speers (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Rob Baird (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Louise Cooley (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Karina Kennedy (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Joep de Ligt (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); William Rawlinson (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Sebastiaan van Hal (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Deborah Williamson (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Vitali Sintchenko (The University of Sydney. Sydney Institute for Infectious Diseases. Sydney, NSW, Australia / NSW Health Pathology. Institute of Clinical Pathology and Medical Research. Westmead, NSW, Australia); Benjamin P. Howde (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia).
COVID-19 Impact Project: Risha Singh (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); SueMin Nathaniel-Girdharrie (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Lisa Edghill (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Lisa Indar (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Joy St. John (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Gabriel Gonzalez-Escobar (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Vernie Ramkisoon (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Arianne Brown-Jordan (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Anushka Ramjag (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Nicholas Mohammed (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Jerome E. Foster (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Irad Potter (Ministry of Health and Social Development. Road Town, Tortola, British Virgin Islands); Sharra Greenaway-Duberry (Ministry of Health and Social Services. Brades, Montserrat); Kenneth George (Ministry of Health and Wellness. Bridgetown, Barbados); Sharon Belmar-George (Ministry of Health and Wellness. Castries, Saint Lucia); John Lee (Ministry of Health and Wellness. George Town, Cayman Islands); Jacqueline Bisasor-McKenzie (Ministry of Health and Wellness. Kingston, Jamaica); Nadia Astwood (Ministry of Health, Agriculture, Sports and Human Services. Cockburn Town, Turks and Caicos Islands); Rhonda Sealey-Thomas (Ministry of Health. St John's, Antigua and Barbuda); Hazel Laws (Ministry of Health. Basseterre, Saint Kitts and Nevis); Narine Singh (Ministry of Health. Georgetown, Guyana); Ayoola Oyinloye (Ministry of Health. Hamilton, Bermuda); Pearl McMillan (Ministry of Health. Nassau, Bahamas); Avery Hinds (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Naresh Nandram (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Roshan Parasram (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Zobida Khan-Mohammed (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Shawn Charles (Ministry of Health. St. Georges, Grenada); Aisha Andrewin (Ministry of Health. The Valley, Anguilla); David Johnson (Ministry of Health, Wellness and New Health Investment. Roseau, Dominica); Simone Keizer-Beache (Ministry of Health, Wellness and the Environment. Kingstown, Saint Vincent and the Grenadines); Chris Oura (The University of the West Indies. Faculty of Medical Sciences. School of Veterinary Medicine. St. Augustine, Republic of Trinidad and Tobago); Sarah C. Hill (Royal Veterinary College. Hawkshead, UK); Oliver G. Pybus (Royal Veterinary College. Hawkshead, UK / University of Oxford. Department of Zoology. Oxford, UK); Nuno R. Faria (Imperial College London. School of Public Health. MRC Centre for Global Infectious Disease Analysis. London, UK / University of Oxford. Department of Zoology. Oxford, UK); Nikita S. D. Sahadeo (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Christine V. F. Carrington (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago).
Danish Covid-19 Genome Consortium: Marc Stegger (Aalborg University. Aalborg, Denmark); Mads Albertsen (Statens Serum Institut. Copenhagen, Denmark); Anders Fomsgaard (Statens Serum Institut. Copenhagen, Denmark); Morten Rasmussen (Statens Serum Institut. Copenhagen, Denmark).
Fiocruz COVID-19 Genomic Surveillance Network: Ricardo Khouri (Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Salvador, BA, Brasil); Felipe Gomes Naveca (Fundação Oswaldo Cruz. Instituto Leônidas e Maria Deane. Manaus, AM, Brasil); Tiago Gräf (Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Salvador, BA, Brasil); Fábio Miyajima (Fundação Oswaldo Cruz. Fiocruz Ceará. Eusébio, CE, Brasil); Gabriel da Luz Wallau (Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Recife, PE, Brasil); Fernando Motta (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil); Paola Cristina Resende (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil); Marilda Agudo Mendonça Teixeira de Siqueira (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil).
GISAID core curation team: Shruti Khare (GISAID Global Data Science Initiative. Munich, Germany); Lucas Freitas (GISAID Global Data Science Initiative. Munich, Germany); Constanza Schiavina (GISAID Global Data Science Initiative. Munich, Germany); Gunter Bach (GISAID Global Data Science Initiative. Munich, Germany); Mark B. Schultz (GISAID Global Data Science Initiative. Munich, Germany); Yi Hong Chew (GISAID Global Data Science Initiative. Munich, Germany); Meera Makheja (GISAID Global Data Science Initiative. Munich, Germany); Priscila Born (GISAID Global Data Science Initiative. Munich, Germany); Gabriela Calegario (GISAID Global Data Science Initiative. Munich, Germany); Sofia Romano (GISAID Global Data Science Initiative. Munich, Germany); Juan Finello (GISAID Global Data Science Initiative. Munich, Germany); Amadou Diallo (GISAID Global Data Science Initiative. Munich, Germany); Raphael T. C. Lee (GISAID Global Data Science Initiative. Munich, Germany); Ya Ni Xu (GISAID Global Data Science Initiative. Munich, Germany); Winston Yeo (GISAID Global Data Science Initiative. Munich, Germany); Suma Tiruvayipati (GISAID Global Data Science Initiative. Munich, Germany); Shilpa Yadahalli (GISAID Global Data Science Initiative. Munich, Germany); Joses Ho (GISAID Global Data Science Initiative. Munich, Germany / Agency for Science Technology and Research. Bioinformatics Institute. Singapore, Singapore / Agency for Science Technology and Research. Infectious Diseases Labs. Singapore, Singapore); Ben Branda (GISAID Global Data Science Initiative. Munich, Germany); Céline Gurry (GISAID Global Data Science Initiative. Munich, Germany); Sebastian Maurer-Stroh (GISAID Global Data Science Initiative. Munich, Germany / Agency for Science Technology and Research. Bioinformatics Institute. Singapore, Singapore / Agency for Science Technology and Research. Infectious Diseases Labs. Singapore, Singapore / National Centre for Infectious Diseases. Singapore, Singapore).
Network for Genomic Surveillance in South Africa (NGS-SA): Eduan Wilkinson (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arash Iranzadeh (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Jennifer Giandhari (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Deelan Doolabh (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Sureshnee Pillay (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Upasana Ramphal (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); James E. San (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Nokukhanya Msomi (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Koleka Mlisana (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Anne von Gottberg (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Sibongile Walaza (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arshad Ismail (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Thabo Mohale (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Susan Engelbrecht (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Gert Van Zyl (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Wolfgang Preiser (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Alex Sigal (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Diana Hardie (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Gert Marais (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Marvin Hsiao (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Stephen Korsman (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Mary-Ann Davies (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Lynn Tyers (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Innocent Mudau (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Denis York (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Caroline Maslo (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Dominique Goedhals (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Shareef Abrahams (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Oluwakemi Laguda-Akingba (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arghavan Alisoltani-Dehkordi (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Adam Godzik (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Constantinos K. Wibmer (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Darren Martin (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Richard J. Lessells (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Jinal N. Bhiman (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Carolyn Williamson (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Houriiyah Tegally (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa / Stellenbosch University. School of Data Science and Computational Thinking. Centre for Epidemic Response and Innovation. Stellenbosch, South Africa); Tulio de Oliveira (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa / Stellenbosch University. School of Data Science and Computational Thinking. Centre for Epidemic Response and Innovation. Stellenbosch, South Africa / Centre for the AIDS Programme of Research in South Africa. Durban, South Africa / University of Washington. Department of Global Health. Seattle, WA, USA).
Swiss SARS-CoV-2 Sequencing Consortium: Chaoran Chen (ETH Zürich. Zurich, Switzerland); Sarah Nadeau (ETH Zürich. Zurich, Switzerland); Louis du Plessis (ETH Zürich. Zurich, Switzerland); Christiane Beckmann (Violler AG. Allschwil, Switzerland); Maurice Redondo (Violler AG. Allschwil, Switzerland); Olivier Kobel (Violler AG. Allschwil, Switzerland); Christoph Noppen (Violler AG. Allschwil, Switzerland); Sophie Seidel (Violler AG. Allschwil, Switzerland); Noemie Santamaria de Souza (Violler AG. Allschwil, Switzerland); Niko Beerenwinkel (ETH Zürich. Zurich, Switzerland); Ivan Topolsky (ETH Zürich. Zurich, Switzerland); Philipp Jablonski (ETH Zürich. Zurich, Switzerland); Lara Fuhrmann (ETH Zürich. Zurich, Switzerland); David Dreifuss (ETH Zürich. Zurich, Switzerland); Katharina Jahn (ETH Zürich. Zurich, Switzerland); Pedro Ferreira (ETH Zürich. Zurich, Switzerland); Susana Posada-Céspedes (ETH Zürich. Zurich, Switzerland); Christian Beisel (ETH Zürich. Zurich, Switzerland); Rebecca Denes (ETH Zürich. Zurich, Switzerland); Mirjam Feldkamp (ETH Zürich. Zurich, Switzerland); Ina Nissen (ETH Zürich. Zurich, Switzerland); Natascha Santacroce (ETH Zürich. Zurich, Switzerland); Elodie Burcklen (ETH Zürich. Zurich, Switzerland); Catharine Aquino (ETH Zürich. Zurich, Switzerland); Andreia Cabral de Gouvea (ETH Zürich. Zurich, Switzerland); Maria Domenica Moccia (ETH Zürich. Zurich, Switzerland); Simon Grüter (ETH Zürich. Zurich, Switzerland); Timothy Sykes (ETH Zürich. Zurich, Switzerland); Lennart Opitz (ETH Zürich. Zurich, Switzerland); Griffin White (ETH Zürich. Zurich, Switzerland); Laura Neff (ETH Zürich. Zurich, Switzerland); Doris Popovic (ETH Zürich. Zurich, Switzerland); Andrea Patrignani (ETH Zürich. Zurich, Switzerland); Jay Tracy (ETH Zürich. Zurich, Switzerland); Ralph Schlapbach (ETH Zürich. Zurich, Switzerland); Emmanouil Dermitzakis (Health 2030 Genome Center. Geneva, Switzerland); Keith Harshman (Health 2030 Genome Center. Geneva, Switzerland); Ioannis Xenarios (Health 2030 Genome Center. Geneva, Switzerland); Henri Pegeot (Health 2030 Genome Center. Geneva, Switzerland); Lorenzo Cerutti (Health 2030 Genome Center. Geneva, Switzerland); Deborah Penet (Health 2030 Genome Center. Geneva, Switzerland); Tanja Stadler (ETH Zürich. Zurich, Switzerland).
A Rede Genômica Fiocruz é formada por especialistas de todas as unidades da Fundação no país e de institutos parceiros que se empenham diariamente em gerar dados mais robustos sobre o comportamento do SARS-Cov-2 e contribuir para um melhor preparo do país no enfrentamento da pandemia em termos de diagnóstico mais precisos e vacinas eficazes. Saiba mais sobre a Rede Genômica Fiocruz em: http://www.genomahcov.fiocruz.br/
Author
Affilliation
Abstract
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize molecular tests, treatments, vaccines, and guide public health responses. To investigate the global SARS-CoV-2 genomic surveillance, we used sequences shared via GISAID to estimate the impact of sequencing intensity and turnaround times on variant detection in 189 countries. In the first two years of the pandemic, 78% of high-income countries sequenced >0.5% of their COVID-19 cases, while 42% of low- and middle-income countries reached that mark. Around 25% of the genomes from high income countries were submitted within 21 days, a pattern observed in 5% of the genomes from low- and middle-income countries. We found that sequencing around 0.5% of the cases, with a turnaround time <21 days, could provide a benchmark for SARS-CoV-2 genomic surveillance. Socioeconomic inequalities undermine the global pandemic preparedness, and efforts must be made to support low- and middle-income countries improve their local sequencing capacity.
Publisher
Nature Research
Citation
BRITO, Anderson Fernandes de et al. Global disparities in SARS-CoV-2 genomic surveillance. Nature Communications, v. 13, n. 7003, p. 1-13, 16 Nov. 2022.Previous version
DOI
10.1038/s41467-022-33713-yISSN
2041-1723Notes
Bulgarian SARS-CoV-2 sequencing group: Todor Kantardjiev (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Nelly Korsun (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Savina Stoitsova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Reneta Dimitrova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Ivelina Trifonova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Veselin Dobrinov (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Lubomira Grigorova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Ivan Stoykov (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Iliana Grigorova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Anna Gancheva (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Ivan N. Ivanov (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Ivva Philipova (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria); Ivailo Alexiev (National Center of Infectious and Parasitic Diseases. Sofia, Bulgaria).Communicable Diseases Genomics Network (Australia and New Zealand): Amy Jennison (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Lex Leong (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); David Speers (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Rob Baird (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Louise Cooley (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Karina Kennedy (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Joep de Ligt (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); William Rawlinson (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Sebastiaan van Hal (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Deborah Williamson (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia); Vitali Sintchenko (The University of Sydney. Sydney Institute for Infectious Diseases. Sydney, NSW, Australia / NSW Health Pathology. Institute of Clinical Pathology and Medical Research. Westmead, NSW, Australia); Benjamin P. Howde (The University of Melbourne at The Peter Doherty Institute for Infection and Immunity. Department of Microbiology and Immunology. Microbiological Diagnostic Unit Public Health Laboratory. Melbourne, VIC, Australia).
COVID-19 Impact Project: Risha Singh (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); SueMin Nathaniel-Girdharrie (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Lisa Edghill (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Lisa Indar (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Joy St. John (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Gabriel Gonzalez-Escobar (Caribbean Public Health Agency. Port of Spain, Republic of Trinidad and Tobago); Vernie Ramkisoon (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Arianne Brown-Jordan (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Anushka Ramjag (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Nicholas Mohammed (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Jerome E. Foster (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Irad Potter (Ministry of Health and Social Development. Road Town, Tortola, British Virgin Islands); Sharra Greenaway-Duberry (Ministry of Health and Social Services. Brades, Montserrat); Kenneth George (Ministry of Health and Wellness. Bridgetown, Barbados); Sharon Belmar-George (Ministry of Health and Wellness. Castries, Saint Lucia); John Lee (Ministry of Health and Wellness. George Town, Cayman Islands); Jacqueline Bisasor-McKenzie (Ministry of Health and Wellness. Kingston, Jamaica); Nadia Astwood (Ministry of Health, Agriculture, Sports and Human Services. Cockburn Town, Turks and Caicos Islands); Rhonda Sealey-Thomas (Ministry of Health. St John's, Antigua and Barbuda); Hazel Laws (Ministry of Health. Basseterre, Saint Kitts and Nevis); Narine Singh (Ministry of Health. Georgetown, Guyana); Ayoola Oyinloye (Ministry of Health. Hamilton, Bermuda); Pearl McMillan (Ministry of Health. Nassau, Bahamas); Avery Hinds (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Naresh Nandram (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Roshan Parasram (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Zobida Khan-Mohammed (Ministry of Health. Port of Spain, Republic of Trinidad and Tobago); Shawn Charles (Ministry of Health. St. Georges, Grenada); Aisha Andrewin (Ministry of Health. The Valley, Anguilla); David Johnson (Ministry of Health, Wellness and New Health Investment. Roseau, Dominica); Simone Keizer-Beache (Ministry of Health, Wellness and the Environment. Kingstown, Saint Vincent and the Grenadines); Chris Oura (The University of the West Indies. Faculty of Medical Sciences. School of Veterinary Medicine. St. Augustine, Republic of Trinidad and Tobago); Sarah C. Hill (Royal Veterinary College. Hawkshead, UK); Oliver G. Pybus (Royal Veterinary College. Hawkshead, UK / University of Oxford. Department of Zoology. Oxford, UK); Nuno R. Faria (Imperial College London. School of Public Health. MRC Centre for Global Infectious Disease Analysis. London, UK / University of Oxford. Department of Zoology. Oxford, UK); Nikita S. D. Sahadeo (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago); Christine V. F. Carrington (The University of the West Indies. Faculty of Medical Sciences. Department of Preclinical Sciences. St. Augustine, Trinidad and Tobago).
Danish Covid-19 Genome Consortium: Marc Stegger (Aalborg University. Aalborg, Denmark); Mads Albertsen (Statens Serum Institut. Copenhagen, Denmark); Anders Fomsgaard (Statens Serum Institut. Copenhagen, Denmark); Morten Rasmussen (Statens Serum Institut. Copenhagen, Denmark).
Fiocruz COVID-19 Genomic Surveillance Network: Ricardo Khouri (Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Salvador, BA, Brasil); Felipe Gomes Naveca (Fundação Oswaldo Cruz. Instituto Leônidas e Maria Deane. Manaus, AM, Brasil); Tiago Gräf (Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Salvador, BA, Brasil); Fábio Miyajima (Fundação Oswaldo Cruz. Fiocruz Ceará. Eusébio, CE, Brasil); Gabriel da Luz Wallau (Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Recife, PE, Brasil); Fernando Motta (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil); Paola Cristina Resende (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil); Marilda Agudo Mendonça Teixeira de Siqueira (Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus Respiratórios, Exantemáticos, Enterovírus e Emergências Virais. Rio de Janeiro, RJ, Brasil).
GISAID core curation team: Shruti Khare (GISAID Global Data Science Initiative. Munich, Germany); Lucas Freitas (GISAID Global Data Science Initiative. Munich, Germany); Constanza Schiavina (GISAID Global Data Science Initiative. Munich, Germany); Gunter Bach (GISAID Global Data Science Initiative. Munich, Germany); Mark B. Schultz (GISAID Global Data Science Initiative. Munich, Germany); Yi Hong Chew (GISAID Global Data Science Initiative. Munich, Germany); Meera Makheja (GISAID Global Data Science Initiative. Munich, Germany); Priscila Born (GISAID Global Data Science Initiative. Munich, Germany); Gabriela Calegario (GISAID Global Data Science Initiative. Munich, Germany); Sofia Romano (GISAID Global Data Science Initiative. Munich, Germany); Juan Finello (GISAID Global Data Science Initiative. Munich, Germany); Amadou Diallo (GISAID Global Data Science Initiative. Munich, Germany); Raphael T. C. Lee (GISAID Global Data Science Initiative. Munich, Germany); Ya Ni Xu (GISAID Global Data Science Initiative. Munich, Germany); Winston Yeo (GISAID Global Data Science Initiative. Munich, Germany); Suma Tiruvayipati (GISAID Global Data Science Initiative. Munich, Germany); Shilpa Yadahalli (GISAID Global Data Science Initiative. Munich, Germany); Joses Ho (GISAID Global Data Science Initiative. Munich, Germany / Agency for Science Technology and Research. Bioinformatics Institute. Singapore, Singapore / Agency for Science Technology and Research. Infectious Diseases Labs. Singapore, Singapore); Ben Branda (GISAID Global Data Science Initiative. Munich, Germany); Céline Gurry (GISAID Global Data Science Initiative. Munich, Germany); Sebastian Maurer-Stroh (GISAID Global Data Science Initiative. Munich, Germany / Agency for Science Technology and Research. Bioinformatics Institute. Singapore, Singapore / Agency for Science Technology and Research. Infectious Diseases Labs. Singapore, Singapore / National Centre for Infectious Diseases. Singapore, Singapore).
Network for Genomic Surveillance in South Africa (NGS-SA): Eduan Wilkinson (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arash Iranzadeh (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Jennifer Giandhari (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Deelan Doolabh (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Sureshnee Pillay (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Upasana Ramphal (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); James E. San (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Nokukhanya Msomi (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Koleka Mlisana (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Anne von Gottberg (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Sibongile Walaza (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arshad Ismail (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Thabo Mohale (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Susan Engelbrecht (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Gert Van Zyl (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Wolfgang Preiser (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Alex Sigal (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Diana Hardie (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Gert Marais (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Marvin Hsiao (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Stephen Korsman (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Mary-Ann Davies (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Lynn Tyers (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Innocent Mudau (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Denis York (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Caroline Maslo (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Dominique Goedhals (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Shareef Abrahams (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Oluwakemi Laguda-Akingba (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Arghavan Alisoltani-Dehkordi (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Adam Godzik (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Constantinos K. Wibmer (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Darren Martin (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Richard J. Lessells (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Jinal N. Bhiman (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Carolyn Williamson (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa); Houriiyah Tegally (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa / Stellenbosch University. School of Data Science and Computational Thinking. Centre for Epidemic Response and Innovation. Stellenbosch, South Africa); Tulio de Oliveira (University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa / Stellenbosch University. School of Data Science and Computational Thinking. Centre for Epidemic Response and Innovation. Stellenbosch, South Africa / Centre for the AIDS Programme of Research in South Africa. Durban, South Africa / University of Washington. Department of Global Health. Seattle, WA, USA).
Swiss SARS-CoV-2 Sequencing Consortium: Chaoran Chen (ETH Zürich. Zurich, Switzerland); Sarah Nadeau (ETH Zürich. Zurich, Switzerland); Louis du Plessis (ETH Zürich. Zurich, Switzerland); Christiane Beckmann (Violler AG. Allschwil, Switzerland); Maurice Redondo (Violler AG. Allschwil, Switzerland); Olivier Kobel (Violler AG. Allschwil, Switzerland); Christoph Noppen (Violler AG. Allschwil, Switzerland); Sophie Seidel (Violler AG. Allschwil, Switzerland); Noemie Santamaria de Souza (Violler AG. Allschwil, Switzerland); Niko Beerenwinkel (ETH Zürich. Zurich, Switzerland); Ivan Topolsky (ETH Zürich. Zurich, Switzerland); Philipp Jablonski (ETH Zürich. Zurich, Switzerland); Lara Fuhrmann (ETH Zürich. Zurich, Switzerland); David Dreifuss (ETH Zürich. Zurich, Switzerland); Katharina Jahn (ETH Zürich. Zurich, Switzerland); Pedro Ferreira (ETH Zürich. Zurich, Switzerland); Susana Posada-Céspedes (ETH Zürich. Zurich, Switzerland); Christian Beisel (ETH Zürich. Zurich, Switzerland); Rebecca Denes (ETH Zürich. Zurich, Switzerland); Mirjam Feldkamp (ETH Zürich. Zurich, Switzerland); Ina Nissen (ETH Zürich. Zurich, Switzerland); Natascha Santacroce (ETH Zürich. Zurich, Switzerland); Elodie Burcklen (ETH Zürich. Zurich, Switzerland); Catharine Aquino (ETH Zürich. Zurich, Switzerland); Andreia Cabral de Gouvea (ETH Zürich. Zurich, Switzerland); Maria Domenica Moccia (ETH Zürich. Zurich, Switzerland); Simon Grüter (ETH Zürich. Zurich, Switzerland); Timothy Sykes (ETH Zürich. Zurich, Switzerland); Lennart Opitz (ETH Zürich. Zurich, Switzerland); Griffin White (ETH Zürich. Zurich, Switzerland); Laura Neff (ETH Zürich. Zurich, Switzerland); Doris Popovic (ETH Zürich. Zurich, Switzerland); Andrea Patrignani (ETH Zürich. Zurich, Switzerland); Jay Tracy (ETH Zürich. Zurich, Switzerland); Ralph Schlapbach (ETH Zürich. Zurich, Switzerland); Emmanouil Dermitzakis (Health 2030 Genome Center. Geneva, Switzerland); Keith Harshman (Health 2030 Genome Center. Geneva, Switzerland); Ioannis Xenarios (Health 2030 Genome Center. Geneva, Switzerland); Henri Pegeot (Health 2030 Genome Center. Geneva, Switzerland); Lorenzo Cerutti (Health 2030 Genome Center. Geneva, Switzerland); Deborah Penet (Health 2030 Genome Center. Geneva, Switzerland); Tanja Stadler (ETH Zürich. Zurich, Switzerland).
A Rede Genômica Fiocruz é formada por especialistas de todas as unidades da Fundação no país e de institutos parceiros que se empenham diariamente em gerar dados mais robustos sobre o comportamento do SARS-Cov-2 e contribuir para um melhor preparo do país no enfrentamento da pandemia em termos de diagnóstico mais precisos e vacinas eficazes. Saiba mais sobre a Rede Genômica Fiocruz em: http://www.genomahcov.fiocruz.br/
Share