Please use this identifier to cite or link to this item:
https://www.arca.fiocruz.br/handle/icict/67600
Type
ArticleCopyright
Open access
Collections
Metadata
Show full item record12
CITATIONS
12
Total citations
12
Recent citations
n/a
Field Citation Ratio
n/a
Relative Citation Ratio
PROTEOME-SCALE RECOMBINANT STANDARDS AND A ROBUST HIGH-SPEED SEARCH ENGINE TO ADVANCE CROSS-LINKING MS-BASED INTERACTOMICS
Author
Affilliation
Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Absea Biotechnology Ltd. ZGC Life Science Park. Beijing, China.
Universidade Estadual de Campinas. Departamento de Química. Campinas, SP, Brasil.
Absea Biotechnology Ltd. ZGC Life Science Park. Beijing, China.
Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany / Charité Universitätsmedizin Berlin. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Absea Biotechnology Ltd. ZGC Life Science Park. Beijing, China.
Universidade Estadual de Campinas. Departamento de Química. Campinas, SP, Brasil.
Absea Biotechnology Ltd. ZGC Life Science Park. Beijing, China.
Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany.
Leibniz-Forschungsinstitut für Molekulare Pharmakologie. Department of Structural Biology. Berlin, Germany / Charité Universitätsmedizin Berlin. Berlin, Germany.
Abstract
Advancing data analysis tools for proteome-wide cross-linking mass spectrometry (XL-MS) requires ground-truth standards that mimic biological complexity. Here we develop well-controlled XL-MS standards comprising hundreds of recombinant proteins that are systematically mixed for cross-linking. We use one standard dataset to guide the development of Scout, a search engine for XL-MS with MS-cleavable cross-linkers. Using other, independent standard datasets and published datasets, we benchmark the performance of Scout and existing XL-MS software. We fnd that Scout ofers an excellent combination of speed, sensitivity and false discovery rate control. The results illustrate how our large recombinant standard can support the development of XL-MS analysis tools and evaluation of XL-MS results.
Share