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2040-12-31
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- MG - IRR - Preprint [54]
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DYNAMICS AND ECOLOGY OF A MULTI-STAGE EXPANSION OF OROPOUCHE VIRUS IN BRASIL
Author
Tegally, Houriiyah
Dellicour, Simon
Poongavanan, Jenicca
Mavian, Carla
Dor, Graeme
Fonseca, Vagner
Tagliamonte, Massimiliano S
Dunaiski, Marcel
Moir, Monika
Wilkinson, Eduan
Albuquerque, Carlos Frederico Campelo de
Frutuoso, Livia C V
CLIMADE Consortium
Holmes, Edward C
Baxter, Cheryl
Lessells, Richard
Kraemer, Moritz U G
Lourenço, José
Alcantara, Luiz Carlos Junior
Oliveira, Tulio de
Giovanetti, Marta
Dellicour, Simon
Poongavanan, Jenicca
Mavian, Carla
Dor, Graeme
Fonseca, Vagner
Tagliamonte, Massimiliano S
Dunaiski, Marcel
Moir, Monika
Wilkinson, Eduan
Albuquerque, Carlos Frederico Campelo de
Frutuoso, Livia C V
CLIMADE Consortium
Holmes, Edward C
Baxter, Cheryl
Lessells, Richard
Kraemer, Moritz U G
Lourenço, José
Alcantara, Luiz Carlos Junior
Oliveira, Tulio de
Giovanetti, Marta
Affilliation
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Spatial Epidemiology Lab. Université Libre de Bruxelles. Brussels, Belgium. / Department of Microbiology, Immunology and Transplantation. Rega Institute. KU Leuven. Leuven, Belgium. / Interuniversity Institute of Bioinformatics in Brussels. Université Libre de Bruxelles. Vrije Universiteit Brussel. Brussels, Belgium.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Emerging Pathogens Institute. Department of Pathology. College of Medicine. University of Florida. Gainesville, FL, USA. / Global Health Program Smithsonian's National Zoo & Conservation Biology Institute. DC, USA. / Global Health Institute. University of Wisconsin-Madison. Madison, Wisconsin, USA.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa./ Universidade do Estado da Bahia. Departamento de Ciências Exatas e da Terra. Salvador, BA, Brasil. / Fundação Oswaldo Cruz. Instituto René Rachou. Belo Horizonte, MG, Brasil.
Interdisciplinary Center for Biotechnology Research. University of Florida. Gainesville, FL, USA.
Computer Science Division. Department of Mathematical Sciences. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Organização Pan-Americana da Saúde/Organização Mundial da Saúde. Brasília, DF, Brasil.
Brasil. Ministério da Saúde. Coordenadora-Geral de Vigilância de Arboviroses. Brasília, DF, Brasil.
Autores de várias filiações
School of Medical Sciences. University of Sydney. Sydney, NSW, Australia.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
KwaZulu-Natal Research Innovation and Sequencing Platform. Nelson R Mandela School of Medicine. University of KwaZulu-Natal. Durban, South Africa.
Pandemic Sciences Institute. University of Oxford. UK. / Department of Biology. University of Oxford. Oxford,UK.
Biosystems and Integrative Sciences Institute. University of Lisbon. Lisbon, Portugal. / Universidade Católica Portuguesa. Católica Medical School. Católica Biomedical Research Center. Lisboa, Portugal.
Universidade do Estado da Bahia. Departamento de Ciências Exatas e da Terra. Salvador, BA, Brasil.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa. / KwaZulu-Natal Research Innovation and Sequencing Platform. Nelson R Mandela School of Medicine. University of KwaZulu-Natal. Durban, South Africa.
Department of Sciences and Technologies for Sustainable Development and One Health. Università Campus Bio-Medico di Roma. Rome, Italy.
Spatial Epidemiology Lab. Université Libre de Bruxelles. Brussels, Belgium. / Department of Microbiology, Immunology and Transplantation. Rega Institute. KU Leuven. Leuven, Belgium. / Interuniversity Institute of Bioinformatics in Brussels. Université Libre de Bruxelles. Vrije Universiteit Brussel. Brussels, Belgium.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Emerging Pathogens Institute. Department of Pathology. College of Medicine. University of Florida. Gainesville, FL, USA. / Global Health Program Smithsonian's National Zoo & Conservation Biology Institute. DC, USA. / Global Health Institute. University of Wisconsin-Madison. Madison, Wisconsin, USA.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa./ Universidade do Estado da Bahia. Departamento de Ciências Exatas e da Terra. Salvador, BA, Brasil. / Fundação Oswaldo Cruz. Instituto René Rachou. Belo Horizonte, MG, Brasil.
Interdisciplinary Center for Biotechnology Research. University of Florida. Gainesville, FL, USA.
Computer Science Division. Department of Mathematical Sciences. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
Organização Pan-Americana da Saúde/Organização Mundial da Saúde. Brasília, DF, Brasil.
Brasil. Ministério da Saúde. Coordenadora-Geral de Vigilância de Arboviroses. Brasília, DF, Brasil.
Autores de várias filiações
School of Medical Sciences. University of Sydney. Sydney, NSW, Australia.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa.
KwaZulu-Natal Research Innovation and Sequencing Platform. Nelson R Mandela School of Medicine. University of KwaZulu-Natal. Durban, South Africa.
Pandemic Sciences Institute. University of Oxford. UK. / Department of Biology. University of Oxford. Oxford,UK.
Biosystems and Integrative Sciences Institute. University of Lisbon. Lisbon, Portugal. / Universidade Católica Portuguesa. Católica Medical School. Católica Biomedical Research Center. Lisboa, Portugal.
Universidade do Estado da Bahia. Departamento de Ciências Exatas e da Terra. Salvador, BA, Brasil.
Centre for Epidemic Response and Innovation. School of Data Science and Computational Thinking. Stellenbosch University. Stellenbosch, South Africa. / KwaZulu-Natal Research Innovation and Sequencing Platform. Nelson R Mandela School of Medicine. University of KwaZulu-Natal. Durban, South Africa.
Department of Sciences and Technologies for Sustainable Development and One Health. Università Campus Bio-Medico di Roma. Rome, Italy.
Abstract
In March 2024, the Pan American Health Organization (PAHO) issued an alert in response to a rapid increase in Oropouche fever cases across South America. Brazil has been particularly affected, reporting a novel reassortant lineage of the Oropouche virus (OROV) and expansion to previously non-endemic areas beyond the Amazon Basin. Utilising phylogeographic approaches, we reveal a multi-scale expansion process with both short and long-distance dispersal events, and diffusion velocities in line with human-mediated jumps. We identify forest cover, banana and cocoa cultivation, temperature, and human population density as key environmental factors associated with OROV range expansion. Using ecological niche modelling, we show that OROV circulated in areas of enhanced ecological suitability immediately preceding its explosive epidemic expansion in the Amazon. This likely resulted from the virus being introduced into simultaneously densely populated and environmentally favourable regions in the Amazon, such as Manaus, leading to an amplified epidemic and spread beyond the Amazon. Our study provides valuable insights into the dispersal and ecological dynamics of OROV, highlighting the role of human mobility in colonisation of new areas, and raising concern over high viral suitability along the Brazilian coast.
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