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MOLECULAR EPIDEMIOLOGY OF NOROVIRUS STRAINS IN PARAGUAYAN CHILDRENDURING 2004–2005: DESCRIPTION OF A POSSIBLE NEW GII.4 CLUSTER
10.1016/j.jcv.2013.07.008
Author
Affilliation
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil / National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.
National University of Asunción. Health Sciences Research Institute. Molecular Biology and Genetics Department. Asunción, Paraguay.
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.
Abstract
tBackground: Noroviruses (NoV) have been shown to be an important cause of morbidity and mortalityin children worldwide, only second after Group A rotaviruses (RVA). In Paraguay, acute gastroenteritis(AGE) is the third cause of mortality in children ≤5 years old.Objectives: To analyze the presence and diversity of NoV in Paraguayan children ≤5 years old presentingAGE.Study design: Three hundred seventy eight fecal samples, negative for pathogenic bacteria and RVA, werecollected from children admitted as ambulatory and hospitalized patients in a large private hospitalfrom Asuncion, Paraguay from 2004 to 2005. The presence and diversity of NoV was determined by twodifferent RT-PCR strategies and nucleotide sequencing.Results: One hundred and sixty one samples were positive for NoV by partial amplification of the viralpolymerase gene (RdRp). No seasonality or differences in the viral prevalence for the different age-groupswere detected. GII and GI NoVs were associated to 58% and 42% of the infections, respectively. The geno-type was determined in 18% (29/161) NoV-positive samples. The genotypes detected were: GII.4 (18%),GII.17 (18%), GII.6 (14%), GII.7 (14%), GII.3 (10%), GII.5 (3%), GII.8 (3%), GII.16 (3%), GI.3 (14%) and GI.8 (3%).Amplification of the ORF2 from the GII.4 strains showed the presence of a new GII.4 variant.Conclusions: The results showed a continuous circulation of NoV in children throughout the two years ofstudy and an extensive diversity of genotypes co-circulating, highlighting the need for better surveillanceof NoV in Paraguayan children.
Publisher
Elsevier
Citation
GALEANO, Maria Eugenia; et al.Molecular epidemiology of norovirus strains in Paraguayan childrenduring 2004–2005: Description of a possible new GII.4 cluster. Journal of Clinical Virology, v.58, n.2, p.378-384, Oct. 2013.ISSN
1386-653210.1016/j.jcv.2013.07.008
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